category: Sequence - DNA Sequencing

programs:

• artemis - DNA sequence annotation tool
• blreads - Process and analyze DNA sequencing reads
• cd-hit-454 - Identify duplicates from 454 reads
• cd-hit-div - sort and divide sequence database into shorter files
• cd-hit-dup - remove duplicates from sequencing reads
• cd-hit-lap - Identify overlapping reads
• FastQC - A quality control tool for high throughput sequence data.
• gde - Genetic Data Environment
• pollux - DNA sequence read correction for all sequencing platforms
• quast - Evaluate genome assemblies
• sequin - Annotate and submit sequences to GenBank
• TraceView - Sequence chromatogram viewer